Calculate exploitation rate in conditioning model

Internal functions for calculating aggregate exploitation rate (.CM_ER()) or by age class (.CM_ER()).

Usage

.CM_ER(
  report,
  type = c("PT", "T", "all"),
  r = 1,
  index_AEQ = NULL,
  brood = FALSE,
  simplify = TRUE
)

.CM_ERage(report, type = c("PT", "T"), brood = FALSE, simplify = TRUE)

Arguments

report: List, output of state variables from individual MCMC samples, obtained with get_report()
type: Character, indicates type of variable to plot
r: Integer, the release strategy for the figure (only if annual = FALSE)
index_AEQ: Optional integer vector to identify years from which to borrow natural mortality and maturity to calculate adult equivalents for incomplete brood years. Only used if at_age = FALSE.
brood: Logical, whether to show results by brood year or return year (FALSE)
simplify: Logical, will return a matrix or array if TRUE, otherwise a list of output by MCMC simulation

Value

An array if simplify = TRUE. Otherwise, a list.