Stores the outputs from the historical reconstruction of salmon operating models.
Slots
Name
Character. Identifying name
nyears
Integer. The number of historical years
nsim
Integer. The number of simulations
nstocks
Integer. The number of stocks
Snames
Character. Stock names
Egg_NOS
Array
[nsim, nstocks, nyears]
. Spawning output, i.e., egg production, of natural origin spawners.Egg_HOS
Array
[nsim, nstocks, nyears]
. Spawning output of hatchery origin spawners.Smolt
Array
[nsim, nstocks, nyears]
. Natural smolt production (sum of offspring of natural and hatchery spawners).Smolt_Rel
Array
[nsim, nstocks, proyears]
. Smolts that are offspring of broodtake, i.e., hatchery releases.Njuv_NOS
Array
[nsim, nstocks, nage, nyears]
. Abundance of juvenile natural origin fish at the beginning of the year.Njuv_HOS
Array
[nsim, nstocks, nage, nyears]
. Abundance of juvenile hatchery origin fish at the beginning of the year.Return_NOS
Array
[nsim, nstocks, nage, nyears]
. Mature fish that will be natural origin spawners.Return_HOS
Array
[nsim, nstocks, nage, nyears]
. Mature fish that will be hatchery origin spawners.Escapement_NOS
Array
[nsim, nstocks, nage, nyears]
. The escapement of mature fish that will be natural origin spawners.Escapement_HOS
Array
[nsim, nstocks, nage, nyears]
. The escapement of mature fish that will be hatchery origin spawners.NOS
Array
[nsim, nstocks, proyears]
. Natural origin spawners.HOS
Array
[nsim, nstocks, proyears]
. Hatchery origin spawners.HOS_effective
Array
[nsim, nstocks, proyears]
. Hatchery origin spawners discounted bygamma
.KPT_NOS
Array
[nsim, nstocks, proyears]
. Pre-terminal fishery kept catch of natural origin spawners.KT_NOS
Array
[nsim, nstocks, proyears]
. Terminal fishery kept catch of natural origin spawners.KPT_HOS
Array
[nsim, nstocks, proyears]
. Pre-terminal fishery kept catch of hatchery origin spawners.KT_HOS
Array
[nsim, nstocks, proyears]
. Terminal fishery kept catch of hatchery origin spawners.DPT_NOS
Array
[nsim, nstocks, proyears]
. Pre-terminal fishery released catch (live and dead) of natural origin spawners.DT_NOS
Array
[nsim, nstocks, proyears]
. Terminal fishery released catch (live and dead) of natural origin spawners.DPT_HOS
Array
[nsim, nstocks, proyears]
. Pre-terminal fishery released catch (live and dead) of hatchery origin spawners.DT_HOS
Array
[nsim, nstocks, proyears]
. Terminal fishery released catch (live and dead) hatchery origin spawners.UPT_NOS
Array
[nsim, nstocks, proyears]
. Pre-terminal fishery harvest rate (from kept catch) of natural origin spawners.UT_NOS
Array
[nsim, nstocks, proyears]
. Terminal fishery harvest rate of natural origin spawners.UPT_HOS
Array
[nsim, nstocks, proyears]
. Pre-terminal fishery harvest rate of hatchery origin spawners.UT_HOS
Array
[nsim, nstocks, proyears]
. Terminal fishery harvest rate of hatchery origin spawners.ExPT_NOS
Array
[nsim, nstocks, proyears]
. Pre-terminal fishery exploitation rate (from kept catch and dead releases) of natural origin spawners.ExT_NOS
Array
[nsim, nstocks, proyears]
. Terminal fishery exploitation rate of natural origin spawners.ExPT_HOS
Array
[nsim, nstocks, proyears]
. Pre-terminal fishery exploitation rate of hatchery origin spawners.ExT_HOS
Array
[nsim, nstocks, proyears]
. Terminal fishery exploitation rate of hatchery origin spawners.Misc
List. Miscellaneous output
Examples
showClass("SHist")
#> Class "SHist" [package "salmonMSE"]
#>
#> Slots:
#>
#> Name: Name nyears nsim nstocks
#> Class: character numeric numeric numeric
#>
#> Name: Snames Egg_NOS Egg_HOS Smolt
#> Class: character array array array
#>
#> Name: Smolt_Rel Njuv_NOS Njuv_HOS Return_NOS
#> Class: array array array array
#>
#> Name: Return_HOS Escapement_NOS Escapement_HOS NOS
#> Class: array array array array
#>
#> Name: HOS HOS_effective KPT_NOS KT_NOS
#> Class: array array array array
#>
#> Name: KPT_HOS KT_HOS DPT_NOS DT_NOS
#> Class: array array array array
#>
#> Name: DPT_HOS DT_HOS UPT_NOS UT_NOS
#> Class: array array array array
#>
#> Name: UPT_HOS UT_HOS ExPT_NOS ExT_NOS
#> Class: array array array array
#>
#> Name: ExPT_HOS ExT_HOS Misc
#> Class: array array list