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Class "SHist"

Source: R/define-SOM.R
SHist-class.Rd

Stores the outputs from the historical reconstruction of salmon operating models.

Slots

Name

Character. Identifying name

nyears

Integer. The number of historical years

nsim

Integer. The number of simulations

nstocks

Integer. The number of stocks

Snames

Character. Stock names

Egg_NOS

Array [nsim, nstocks, nyears]. Spawning output, i.e., egg production, of natural origin spawners.

Egg_HOS

Array [nsim, nstocks, nyears]. Spawning output of hatchery origin spawners.

Smolt

Array [nsim, nstocks, nyears]. Natural smolt production (sum of offspring of natural and hatchery spawners).

Smolt_Rel

Array [nsim, nstocks, proyears]. Smolts that are offspring of broodtake, i.e., hatchery releases.

Njuv_NOS

Array [nsim, nstocks, nage, nyears]. Abundance of juvenile natural origin fish at the beginning of the year.

Njuv_HOS

Array [nsim, nstocks, nage, nyears]. Abundance of juvenile hatchery origin fish at the beginning of the year.

Return_NOS

Array [nsim, nstocks, nage, nyears]. Mature fish that will be natural origin spawners.

Return_HOS

Array [nsim, nstocks, nage, nyears]. Mature fish that will be hatchery origin spawners.

Escapement_NOS

Array [nsim, nstocks, nage, nyears]. The escapement of mature fish that will be natural origin spawners.

Escapement_HOS

Array [nsim, nstocks, nage, nyears]. The escapement of mature fish that will be hatchery origin spawners.

NOS

Array [nsim, nstocks, proyears]. Natural origin spawners.

HOS

Array [nsim, nstocks, proyears]. Hatchery origin spawners.

HOS_effective

Array [nsim, nstocks, proyears]. Hatchery origin spawners discounted by gamma.

KPT_NOS

Array [nsim, nstocks, proyears]. Pre-terminal fishery kept catch of natural origin spawners.

KT_NOS

Array [nsim, nstocks, proyears]. Terminal fishery kept catch of natural origin spawners.

KPT_HOS

Array [nsim, nstocks, proyears]. Pre-terminal fishery kept catch of hatchery origin spawners.

KT_HOS

Array [nsim, nstocks, proyears]. Terminal fishery kept catch of hatchery origin spawners.

DPT_NOS

Array [nsim, nstocks, proyears]. Pre-terminal fishery released catch (live and dead) of natural origin spawners.

DT_NOS

Array [nsim, nstocks, proyears]. Terminal fishery released catch (live and dead) of natural origin spawners.

DPT_HOS

Array [nsim, nstocks, proyears]. Pre-terminal fishery released catch (live and dead) of hatchery origin spawners.

DT_HOS

Array [nsim, nstocks, proyears]. Terminal fishery released catch (live and dead) hatchery origin spawners.

UPT_NOS

Array [nsim, nstocks, proyears]. Pre-terminal fishery harvest rate (from kept catch) of natural origin spawners.

UT_NOS

Array [nsim, nstocks, proyears]. Terminal fishery harvest rate of natural origin spawners.

UPT_HOS

Array [nsim, nstocks, proyears]. Pre-terminal fishery harvest rate of hatchery origin spawners.

UT_HOS

Array [nsim, nstocks, proyears]. Terminal fishery harvest rate of hatchery origin spawners.

ExPT_NOS

Array [nsim, nstocks, proyears]. Pre-terminal fishery exploitation rate (from kept catch and dead releases) of natural origin spawners.

ExT_NOS

Array [nsim, nstocks, proyears]. Terminal fishery exploitation rate of natural origin spawners.

ExPT_HOS

Array [nsim, nstocks, proyears]. Pre-terminal fishery exploitation rate of hatchery origin spawners.

ExT_HOS

Array [nsim, nstocks, proyears]. Terminal fishery exploitation rate of hatchery origin spawners.

Misc

List. Miscellaneous output

Examples

showClass("SHist")
#> Class "SHist" [package "salmonMSE"]
#> 
#> Slots:
#>                                                                   
#> Name:            Name         nyears           nsim        nstocks
#> Class:      character        numeric        numeric        numeric
#>                                                                   
#> Name:          Snames        Egg_NOS        Egg_HOS          Smolt
#> Class:      character          array          array          array
#>                                                                   
#> Name:       Smolt_Rel       Njuv_NOS       Njuv_HOS     Return_NOS
#> Class:          array          array          array          array
#>                                                                   
#> Name:      Return_HOS Escapement_NOS Escapement_HOS            NOS
#> Class:          array          array          array          array
#>                                                                   
#> Name:             HOS  HOS_effective        KPT_NOS         KT_NOS
#> Class:          array          array          array          array
#>                                                                   
#> Name:         KPT_HOS         KT_HOS        DPT_NOS         DT_NOS
#> Class:          array          array          array          array
#>                                                                   
#> Name:         DPT_HOS         DT_HOS        UPT_NOS         UT_NOS
#> Class:          array          array          array          array
#>                                                                   
#> Name:         UPT_HOS         UT_HOS       ExPT_NOS        ExT_NOS
#> Class:          array          array          array          array
#>                                                    
#> Name:        ExPT_HOS        ExT_HOS           Misc
#> Class:          array          array           list