Plot life history groups and release strategies

Plot the annual proportions of life history groups (natural origin fish) or release strategies (hatchery origin) at various life stages

Usage

plot_LHG(
  SMSE,
  var = "NOS",
  type = c("prop", "abs"),
  s = 1,
  FUN = median,
  figure = TRUE,
  xlab = "Projection Year",
  ylab,
  name
)

plot_RS(
  SMSE,
  var = "HOS",
  type = c("prop", "abs"),
  s = 1,
  FUN = median,
  figure = TRUE,
  xlab = "Projection Year",
  ylab,
  name
)

Arguments

SMSE

Class SMSE object returned by salmonMSE()

var

Character. Slot for the state variables in SMSE@Misc$LHG[[1]] or SMSE@Misc$RS[[1]].

type

Character to indicate whether to plot proportion or absolute numbers

s

Integer. Population index for multi-population model (e.g., s = 1 is the first population in the model)

FUN

Summarizing function across simulations, typically median() or mean()

figure

Logical, whether to generate a figure (set to FALSE if only using the function to return the data matrix)

xlab

Character. Name of time variable for the figure

ylab

Character. Name of the state variable for the figure

name

Character. Vector of names for the life history groups or release strategies

Value

Base graphics figure, barplot of distribution or total numbers by LHG or RS. Returns invisibly the matrix of plotted values

See also

plot_statevar_ts()